If you want to count the number of posts the user commented on, you can try:
global $wpdb;
$sql="SELECT COUNT( comment_ID ) FROM " . $wpdb->comments . '
WHERE user_id = %d
AND comment_approved = "1"
AND comment_type NOT IN ("pingback", "trackback" )
GROUP by comment_post_ID';
$count = $wpdb->get_var( $wpdb->prepare( $sql, $user->ID ) );
where we group by the post ID.