As far as I know, WordPress does not require a q= parameter set to the original request (the pretty permalink). So in the second option, the q= parameter will be silently ignored.
According to the Nginx wiki page for WordPress, the query parameters (?$args or $is_args$args) are included:
… so non-default permalinks doesn’t break when using query string
I do not know what “non-default permalinks” are, but I just use the following, which works fine with pretty permalinks:
try_files $uri $uri/ /index.php;
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