You can just check if $meta
and $meta_desc
exist. If not, don’t echo anything.
$popular_topics = get_field('popular_topics');
if ( $popular_topics ) :
foreach ( $popular_topics as $topic ) :
$id = $topic->term_id;
$meta = get_option('wpseo_taxonomy_meta');
if ( $id && ( $meta && !empty($meta) ) ) :
$meta_desc = $meta['category'][$id]['wpseo_desc'];
if ( $meta_desc ) : ?>
<p class="my-paragraph">
<?php echo esc_html( $meta_desc ); ?>
</p>
<?php
endif;
endif;
endforeach;
endif;