Use a separate function to enable shortcodes in the text widget because trying to do so within the shortcode function itself is too late.
// Enable the use of shortcodes within the text widget.
function wpse249090_widget_text_enable_shortcodes() {
add_filter( 'widget_text', 'do_shortcode' );
}
add_action( 'init', 'wpse249090_widget_text_enable_shortcodes' );
// Do TimeStamper Shortcode ( timestamper() )
function timestamper( $atts ) {
$time = current_time( 'timestamp' );
return $time;
}
add_shortcode( 'timestamp', 'timestamper' );