if the modification is called in the action admin_menu
you can come just after, in order to correct the menu with some code like this :
add_action("admin_menu", function () {
$parent_file="parent.php";
$full_url = add_query_arg( 'action', 'action-name', admin_url( 'users.php' ) );
global $submenu;
// searching the last submenu
$last = array_pop($submenu[$parent_file]);
// correcting the URL
$last[2] = $full_url;
// replacing in the array
$submenu[$parent_file][] = $last;
}, 20);
// default priority (used by the plugin) is 10, so I choose 20 to be sur that it comes after the plugin