Problem with comment box

Make sure your header.php file has this before the wp_head function:

<?php wp_enqueue_script( 'comment-reply' ); ?>

Note:
Some themes may use the comment-reply function in the themes function.php file.

Caution:

I’ve scanned your theme and I notice it’s using an outdated version of TimThumb which is a serious security flaw. You can install the TimThumb Vulnerability Scanner Plugin to do an auto-check, it also updates TimThumb to the latest version for you. You should fix this immediately.

UPDATE:

The question continued via email. The theme worked fine on my site which led me to believe it was a plug-in conflict. I suggested the standard undershooting steps:

  1. Disable all plug-ins
  2. Enable them one at a time to reveal the conflicting plug-in
  3. Remove the plug-in and find one to take it’s place or attempt to make
    changes to repair the issue.