Try this:
// Wrap <li> tags around each template item.
add_filter( 'child-pages-shortcode-template', 'wpse_113253_child_pages_shortcode_template' );
// Wrap <div> and <ul> tags around everything.
add_filter( 'child-pages-shortcode-output', 'wpse_113253_child_pages_shortcode_output' );
/**
* Wrap <li> tags around each template item.
*/
function wpse_113253_child_pages_shortcode_template( $template ) {
return "<li>$template</li>\n";
}
/**
* Wrap a <div> and <ul> tags around everything.
*/
function wpse_113253_child_pages_shortcode_output( $html ) {
return "
<div class="row-fluid">
<ul class="thumbnails">
$html
</ul><!-- end .thumbnails -->
</div><!-- end .row-fluid -->
";
}
Note: I didn’t install the plugin to test this code.