Okay, I’ve found the answer. This is not possible. So I had to build the permalink manually this way:
<ul class="list-items categories">
<?php $category_ids = get_all_category_ids();
$args = array( 'orderby' => 'slug', 'parent' => 0 );
$categories = get_categories( $args );
foreach ( $categories as $category ) {
echo '<li><a href="' . $category->slug . '" rel="bookmark">' . $category->name . '</a>
</li>'; } ?>
</ul>
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