I just tried the plugin you mentioned. You need to use following code to get categories from that plugin:
wp_list_categories('title_li=Carousel%20Categories&orderby=name&taxonomy=carousel_category&hide_empty=0');
Notice the ‘taxonomy’ parameter in the querystring, it has the value of custom taxonomy registered by plugin. The default value is ‘category’ which is WordPress default category. For any other custom taxonomy you need to change it. I hope this helps.
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