When you register your custom post type you can set which taxonomies will be registered for this post type. So you can register your custom ‘Course’ taxonomy and the built-in ‘Category’ taxonomy with your custom post type ‘Tutorials’. And posts will just be registered with ‘Category’.
function tutorial_setup_post_type() {
$args = array(
'public' => true,
'label' => __( 'Tutorials', 'textdomain' ),
'taxonomies' => array(
'category',
'course'
),
);
register_post_type( 'tutorial', $args );
}
add_action( 'init', 'tutorial_setup_post_type' );
https://developer.wordpress.org/reference/functions/register_post_type/