If it’s just a simple tweak to the output string then just use str_replace.
$averagePricejson = "[[0,0],[1,39000],[2,62500],[3,80000]]";
$averagePricejson = str_replace( "]]", "],]", $averagePricejson);
echo $averagePricejson; // [[0,0],[1,39000],[2,62500],[3,80000],]