I solved my own issue.
I needed to filter out all the <br> and white space between my shortcode tags. WP was auto adding breaks which my functions was adding to the output of my shortcode. So I used the strip tags function to filter the $content of my shortcode
$content = strip_tags($content);
I added this to my shortcode function and it worked like a charm!
Thanks to the people who pointed out the potential issues with the previous answer.
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