Multisite – Change Add user to Blog notification email

There’s a wp_mail filter you might be able to use:

add_filter( 'wp_mail', 'wpse362824_filter_message' );
function wpse362824_filter_message( $args ) {
    // The $expected_subject is taken from the wp_mail() call
    // in user-new.php.
    $expected_subject = sprintf(
        __( '[%s] Joining confirmation' ), 
        wp_specialchars_decode( get_option( 'blogname' ) )
    );
    // If the Subject: line matches the one from user-new.php,
    // do the substitution.
    if ( $expected_subject === $args['subject'] ) {
        $args['message'] = 'Your message goes here';
    }
    return $args;
}