I posted this question on stackoverflow, and got this answer from @cmorrissey. Credit goes to him for this code.
<?php if($novus_logo_upload = get_option('novus_logo_upload')){ ?>
<!-- Logo Image -->
<a href="https://wordpress.stackexchange.com/questions/149443/<?php bloginfo("url'); ?>/home" title="<? echo esc_attr( get_bloginfo( 'name', 'display' ) ); ?>" rel="home">
<? echo '<img class=\"logo"\ src="'.$novus_logo_upload.'" width=\"100%"\ />'; ?>
</a>
<?php } else if($novus_logo_text = get_option('novus_logo_text')){ ?>
<!-- Logo Text -->
<h1><a href="https://wordpress.stackexchange.com/questions/149443/<?php bloginfo("url'); ?>/home" title="<? echo esc_attr( get_bloginfo( 'name', 'display' ) ); ?>" rel="home">
<? echo $novus_logo_text; ?>
</a></h1>
<?php } else { ?>
<!-- Default -->
<h1><a href="https://wordpress.stackexchange.com/questions/149443/<?php bloginfo("url'); ?>/home" title="<? echo esc_attr( get_bloginfo( 'name', 'display' ) ); ?>" rel="home"> My Site </a></h1>
<?php } ?>