use java-ffmpeg wrapper, or simply use java runtime to execute ffmpeg?

If I’m not mistaken, the “ffmpeg wrapper” project you linked to is out of date and not maintained. ffmpeg is a very active project, lot’s of changes and releases all the time.

You should look at the Xuggler project, this provides a Java API for what you want to do, and they have tight integration with ffmpeg.

Should you choose to go down the Runtime.exec() path, this Red5 thread should be useful:

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