Automatically added brs and paragraphs?

You can postpone the wp_autop filter. WordPress has this filter enabled by default. And it is processing before the shortcode output. 

remove_filter( 'the_content', 'wpautop' );
add_filter( 'the_content', 'wpautop' , 12);

Add this to your functions.php and check if the problem persist!

See a similar problem here: stray <p> elements

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