Enqueueing Script to footer puts it at the very bottom

You want something like this.

// assuming you want to load this only on frontend
if ( ! is_admin() )
     add_action( 'wp_enqueue_scripts', 'wpse_112876_load_scripts' );

function wpse_112876_load_scripts() {
     wp_enqueue_script( 'my_foundation', get_template_directory_uri() . '/js/foundation.min.js', null, '4.3.3', true );

     wp_enqueue_script( 'my_foundation_init', get_template_directory_uri() . '/js/foundation_init.js', array( 'my_foundation' ), null, true );
}