Gutenberg blocks shortcodes compatibility

Gutenberg has a block for this. The Shortcode Block.

There are no settings for the shortcode block. You simply have one
input box where you can insert a shortcode.

Shortcodes are most commonly used by plugins to add functionality to a
WordPress site, without the need to write custom code. Essentially,
it’s a shortcut to adding more advanced pieces of content.

You should be perfectly fine to use your shortcode.