You have to trigger the click event. Try,
jQuery(document).ready(function() { jQuery("#collapse-menu").trigger('click'); });
Update:
Use the following code to check if menu is already folded, if not trigger click event to fold it.
jQuery(document).ready(function() {
if ( !$(document.body).hasClass('folded') ) {
jQuery("#collapse-menu").trigger('click');
}
});