How does WordPress redirect without using .htaccess?

The literal answer to your question is that wordpress uses wp_redirect() to perform redirects. You can see the source here https://developer.wordpress.org/reference/functions/wp_redirect/

The implied part of your question — about how wordpress decides when to do so — is a bit more complicated and might be influenced by plugins such as yoast. But, for example, if wordpress’s rewrite rules select a post which has a different canonical url from the requested url, wordpress may redirect to the canonical url.

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