Ok, I think I solved:
followed this discussion so I imported Bootstrap SASS file in a new SASS file creating a custom class as container to isolate Bootstrap components and compiled the custom .scss to .css. Fixed html and body selector in new CSS file and to have working tooltips I did:
$('[data-toggle="tooltip"]').tooltip({
container: '.custom-container', //needed to have working tooltips
html: true,
});
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