After moving my site from a dev subdomain, to root, all my custom meta data is gone

Been there done that. Try this:
https://interconnectit.com/products/search-and-replace-for-wordpress-databases/
Its a search and replace tool that you put in your WordPress root and just run it from mydomain.dev/searchreplacedb2.php

It fixes the serialization problem when you want to change the url:s to the live one.

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