You can check for user capability (aka non-admins) and remove shortcode you don’t want to be formatted:
…in functions.php
$cuser = wp_get_current_user();
if (!isset($cuser->allcaps['administrator']) || !$cuser->allcaps['administrator']) {
remove_shortcode('your_shortcode_tag_name');
}
You can also remove all shortcodes using remove_all_shortcodes function.
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