From the wording of your question, you must be adding scripts by writing <script>
tags in your template. Add your own scripts via wp_enqueue_script()
in your template’s functions.php
, appropriately setting dependences on jQuery, and wp_head()
will add the scripts for you.
function my_scripts() {
wp_enqueue_script( 'my-sweet-script', get_bloginfo('template_directory') . '/script.js', array('jquery') );
}
add_action('template_redirect', 'my_scripts');
See the codex page for more info.