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Are you using a Theme that you control?
If not, then every time the Theme updates, you’ll lose your modifications to the header. Or else, you’ll have to fork the Theme, or maintain/backport your changes every time the Theme updates.
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Do you only use Plugins under your control?
If not, then you’ll have to check for script conflicts every time you activate or update a Plugin that uses a script.
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Are you using a core-bundled script?
If so, then you’ll have to check for core script conflicts every time you update core, as well as every time you update a Plugin that enqueues a core-bundled script.
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Do you use a caching Plugin?
If so, then you lose some or all of the benefits of script concatenation/minimizing/caching, since your script is hard-coded in the document head rather than enqueued.
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