Check your rewrites to make sure it follow this
if (!-e $request_filename) {
rewrite ^/[_0-9a-zA-Z-]+(/wp-.*) $1 last;
rewrite ^/[_0-9a-zA-Z-]+.*(/wp-admin/.*\.php)$ $1 last;
rewrite ^/[_0-9a-zA-Z-]+(/.*\.php)$ $1 last;
}
not this
if (!-e $request_filename) {
rewrite /wp-admin$ $scheme://$host$request_uri/ permanent;
rewrite ^(/[^/]+)?(/wp-.*) $2 last;
rewrite ^(/[^/]+)?(/.*\.php) $2 last;
}