Applying filters to the_content() to separate content if any `add_shortcode()` is found?

This is very challenging for generic case since shortcodes can be nested, can be self-closing or enclosing and so on.

If you need to do this on limited and fixed set of specific shortcodes that would be easier. I would unregister their shortcode handlers and register custom handlers that call original ones and add necessary markup around.

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