Including Javascript options

Use wp_localize_script to pass data from php to your javascript:

wp_register_script(
    'wpa_script',
    get_template_directory_uri() . '/js/script.js',
    array('jquery'),
    null,
    false
);

wp_localize_script(
    'wpa_script',
    'WPAData',
    array(
        'slides' => array( 'http://google.com', 'http://google.co.uk' )
    )
);