WP CLI has a command that can upgrade the database:
wp core update-db
If that command doesn’t upgrade the entire network, you can pass in the site you want upgraded as an additional parameter
e.g.
wp core update-db --site="http://example.com/testsite/"
You can get WP CLI from here:
it’s also available on github
You can install using:
curl -L https://raw.github.com/wp-cli/builds/gh-pages/phar/wp-cli.phar > wp-cli.phar
It also comes with VVV
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