This is the relevant code from ms_site_check()
:
$blog = get_blog_details();
// truncated
if ( '1' == $blog->deleted ) {
if ( file_exists( WP_CONTENT_DIR . '/blog-deleted.php' ) )
return WP_CONTENT_DIR . '/blog-deleted.php';
else
wp_die( __( 'This user has elected to delete their account and the content is no longer available.' ), '', array( 'response' => 410 ) );
}
So while site might not be actually deleted, for some reason WordPress is pretty confident that it is. The first thing I’d look at are DB queries being generated/run and data which is returned.
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