Understanding the order() function

This seems to explain it.

The definition of order is that a[order(a)] is in increasing order. This works with your example, where the correct order is the fourth, second, first, then third element.

You may have been looking for rank, which returns the rank of the elements
R> a <- c(4.1, 3.2, 6.1, 3.1)
R> order(a)
[1] 4 2 1 3
R> rank(a)
[1] 3 2 4 1
so rank tells you what order the numbers are in, order tells you how to get them in ascending order.

plot(a, rank(a)/length(a)) will give a graph of the CDF. To see why order is useful, though, try plot(a, rank(a)/length(a),type="S") which gives a mess, because the data are not in increasing order

If you did
oo<-order(a)
plot(a[oo],rank(a[oo])/length(a),type="S")
or simply
oo<-order(a)
plot(a[oo],(1:length(a))/length(a)),type="S")
you get a line graph of the CDF.

I’ll bet you’re thinking of rank.