Want to include ad code after related post

I’m absolutely guessing here, but you may want to put your code between:

<?php if ( get_option('wap8_post_rel') == 'true' ) { locate_template( '/includes/relatedposts.php', true, true ); } ?> // these are your related posts

and

<?php comments_template( '', true ); ?> //these are the comments

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