If i am able to understand you correctly then you want to make changes into entire data frame,assuming of which i can suggest you to use apply like below, where df is your data frame.
apply(df,2,function(x)ifelse((x>0),1,0))
You can also use if its for only one vector something like below:
x <- c(-2,3,1,0) y <- ifelse(x>0,1,0) print(y) [1] 0 1 1 0 #Output
Hope this helps
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