Changes to permalink structure results in 404 error for all pages other than home

Are you wanting the site to render as www.thesite.com/news or www.thesite.com/wordpress/news

If just www.thesite.com/news, try this change:

<IfModule mod_rewrite.c>
RewriteEngine On
RewriteBase /
RewriteRule ^index\.php$ - [L]
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule . /index.php [L]
</IfModule>

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