I think you can use this plugin:
http://wordpress.org/extend/plugins/wpmu-plugin-stats/screenshots/
Provides info to site admins as to which plugins are activated
sitewide, and which blogs plugins are activated on.
This plugin is using get_plugins()
http://codex.wordpress.org/Function_Reference/get_plugins
and fetches get_option('active_plugins') for each blog to compare.
It uses switch_to_blog() on each blog so it might be slower on large multisites, but I think this function got faster after the wordpress 3.5 update, according to
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