Not sure about “lost” header. Was it part of markup? CSS background? Custom background?
Losing menu assignments is normal behavior.
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Child theme is not same theme as parent
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It is completely separate theme, that uses parent as fall-back
Child theme is loaded and processed before parent theme (yeah, seems a little backwards). Don’t expect it to act simply as parent theme with some changes. It seems like that, but not quite that internally.
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