The problem is submodules are not automatically imported. You have to explicitly import the api module:
import myproject.mymodule.api print myproject.mymodule.api.MyClass
If you really insist on api being available when importing myproject.mymodule you can put this in myproject/mymodule/__init__.py:
import myproject.mymodule.api
Then this will work as expected:
from myproject import mymodule print mymodule.api.MyClass
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