I can’t offer an explanation as to why this is happening, but I can give you a quick fix to silence it.
The function responsible is wp_notify_moderator
, which is a pluggable function. You can copy the contents of the function into your own plugin and modify it to return true
in the case of a comment moderation email.
after the line:
$comment = get_comment($comment_id);
add:
if( empty( $comment->comment_type ) ) return true;
This may not be a long-term solution, but it’ll give inboxes a rest until it’s otherwise sorted.
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