Displaying Posts Attached to Custom Taxonomy Terms

The way you query for Taxonomy is deprecated, see the reference in the Codex: http://codex.wordpress.org/Class_Reference/WP_Query#Category_Parameters

So instead of 

'taxonomy'=> $taxonomy,

you should use this:

'tax_query' => array(
        array(
            'taxonomy' => $taxonomy,
            'field' => 'slug',
            'terms' => $section->slug 
        )
    )

And make sure that $taxonomy is defined!

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