For regular users, the preferred update method is pressing the “Update” button in wp-admin.
For sysadmins, wp core update + wp core update-db will probably be a lot faster. Note that for multisite instances, you’ll have to update the DB for each site in the network. See https://github.com/wp-cli/wp-cli/issues/683
NB: I might be biased, since I’m currently the maintainer of WP-CLI.
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