When moving a webflow designed site over to WordPress you must put the wf-data info in the header of your WordPress design. The wf-data code will call out specific interactions within your webflow.js. I also call out my CSS in the head of every custom post type template – so if my custom post type is ‘Stories’ – single-stories.php will have a CSS file specific to that new design and then your footer will have a specific webflow.js. I recommend renaming your webflow.js to something specific to your microsite/CPT. This way your new CSS and js will be at the bottom of the cascade and take priority without conflicts.
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