Delete post meta by serialized meta value

Try below code to delete the post_meta by a specific value of the specialized data:

$args = array(
    'post_type' => 'post',
    'meta_key' => 'any-meta-key',
    'posts_per_page' => -1
 );

$query = new WP_Query( $args );
if($query->have_posts()){
    while($query->have_posts()){
        $query->the_post();
        $get_ID = get_post_meta($post->ID, 'any-meta-key', true);

        // Change the id value that you want to delete 
        if ( !empty($get_ID['id']) && $get_ID['id'] == '1' ) {
            delete_post_meta($post->ID,'any-meta-key',$get_ID);
        }
    }
}

Don’t forget to update the test meta key by your meta key.