Subset and ggplot2

Here 2 options for subsetting:

Using subset from base R:

library(ggplot2)
ggplot(subset(dat,ID %in% c("P1" , "P3"))) + 
         geom_line(aes(Value1, Value2, group=ID, colour=ID))

Using subset the argument of geom_line(Note I am using plyr package to use the special . function).

library(plyr)
ggplot(data=dat)+ 
  geom_line(aes(Value1, Value2, group=ID, colour=ID),
                ,subset = .(ID %in% c("P1" , "P3")))

You can also use the complementary subsetting:

subset(dat,ID != "P2")